jiosephlee / assay-transfer-tool

huggingface.co
Total runs: 50
24-hour runs: 0
7-day runs: 0
30-day runs: -373
Model's Last Updated: July 16 2026
text-generation

Introduction of assay-transfer-tool

Model Details of assay-transfer-tool

assay-transfer-tool

A full-parameter SFT of the Qwen3ForCausalLM Intern-S1-mini language backbone ( jiosephlee/Intern-S1-mini-lm ) for binary assay-transfer prediction on small molecules. Given a molecule (SMILES) and a paired-choice prompt, the model answers with (A) or (B) .

The model uses the Intern SMILES-aware tokenizer, so load with trust_remote_code=True .

Training
  • Base model: jiosephlee/Intern-S1-mini-lm (Qwen3ForCausalLM, vocab 153216)
  • Dataset: jiosephlee/assay-transfer-intern (158,429 train rows)
  • Regime: full-parameter BF16, packing + padding-free, gradient checkpointing, Liger fused linear cross-entropy, paged_adamw_8bit
  • Chat template: enabled, thinking disabled; completions are (A) / (B)
  • LR: 2e-5 base, with SMILES input-embedding rows trained at 1.5x
  • Max length: 4096, 1 epoch

This checkpoint is the best-validation snapshot (step 50), promoted by the assay-transfer callback on binary macro-F1.

Validation metrics (source_value split, n=1703)
Metric Value
Binary macro-F1 0.6612
Binary accuracy 0.7046
Parse rate 1.00
assay_concept group-avg macro-F1 0.6321
tanimoto_bucket group-avg macro-F1 0.6316

Per-assay macro-F1: Fa 0.532, Fg 0.593, Fh 0.704, oral_bioavailability 0.600, oral_exposure 0.732. Per-Tanimoto-bucket macro-F1: high 0.664, low 0.600.

Usage
from transformers import AutoModelForCausalLM, AutoTokenizer

tok = AutoTokenizer.from_pretrained("jiosephlee/assay-transfer-tool", trust_remote_code=True)
model = AutoModelForCausalLM.from_pretrained("jiosephlee/assay-transfer-tool", torch_dtype="bfloat16")

Runs of jiosephlee assay-transfer-tool on huggingface.co

50
Total runs
0
24-hour runs
0
3-day runs
0
7-day runs
-373
30-day runs

More Information About assay-transfer-tool huggingface.co Model

More assay-transfer-tool license Visit here:

https://choosealicense.com/licenses/apache-2.0

assay-transfer-tool huggingface.co

assay-transfer-tool huggingface.co is an AI model on huggingface.co that provides assay-transfer-tool's model effect (), which can be used instantly with this jiosephlee assay-transfer-tool model. huggingface.co supports a free trial of the assay-transfer-tool model, and also provides paid use of the assay-transfer-tool. Support call assay-transfer-tool model through api, including Node.js, Python, http.

assay-transfer-tool huggingface.co Url

https://huggingface.co/jiosephlee/assay-transfer-tool

jiosephlee assay-transfer-tool online free

assay-transfer-tool huggingface.co is an online trial and call api platform, which integrates assay-transfer-tool's modeling effects, including api services, and provides a free online trial of assay-transfer-tool, you can try assay-transfer-tool online for free by clicking the link below.

jiosephlee assay-transfer-tool online free url in huggingface.co:

https://huggingface.co/jiosephlee/assay-transfer-tool

assay-transfer-tool install

assay-transfer-tool is an open source model from GitHub that offers a free installation service, and any user can find assay-transfer-tool on GitHub to install. At the same time, huggingface.co provides the effect of assay-transfer-tool install, users can directly use assay-transfer-tool installed effect in huggingface.co for debugging and trial. It also supports api for free installation.

assay-transfer-tool install url in huggingface.co:

https://huggingface.co/jiosephlee/assay-transfer-tool

Url of assay-transfer-tool

assay-transfer-tool huggingface.co Url

Provider of assay-transfer-tool huggingface.co

jiosephlee
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